Package: rtemisbio 0.2.2
E.D. Gennatas
rtemisbio: rtemis Bio-informatics
Bio-informatics utilities
Authors:
rtemisbio_0.2.2.tar.gz
rtemisbio_0.2.2.zip(r-4.5)rtemisbio_0.2.2.zip(r-4.4)rtemisbio_0.2.2.zip(r-4.3)
rtemisbio_0.2.2.tgz(r-4.5-any)rtemisbio_0.2.2.tgz(r-4.4-any)rtemisbio_0.2.2.tgz(r-4.3-any)
rtemisbio_0.2.2.tar.gz(r-4.5-noble)rtemisbio_0.2.2.tar.gz(r-4.4-noble)
rtemisbio_0.2.2.tgz(r-4.4-emscripten)rtemisbio_0.2.2.tgz(r-4.3-emscripten)
rtemisbio.pdf |rtemisbio.html✨
rtemisbio/json (API)
| # Install 'rtemisbio' in R: |
| install.packages('rtemisbio', repos = c('https://ictml-project.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/egenn/rtemisbio/issues
Last updated 4 months agofrom:e96799111c. Checks:1 OK, 6 WARNING, 1 ERROR. Indexed: no.
| Target | Result | Latest binary |
|---|---|---|
| Doc / Vignettes | OK | Mar 03 2025 |
| R-4.5-win | WARNING | Mar 03 2025 |
| R-4.5-mac | WARNING | Mar 03 2025 |
| R-4.5-linux | WARNING | Mar 03 2025 |
| R-4.4-win | WARNING | Mar 03 2025 |
| R-4.4-mac | WARNING | Mar 03 2025 |
| R-4.3-win | WARNING | Mar 03 2025 |
| R-4.3-mac | ERROR | Mar 03 2025 |
Exports:a3aa_subas.a3as.xtgene2sequenceint2rangelight_dark_ratioread.a3jsonread.xtjsontoxtuniprot_getwrite.a3jsonwrite.xtjson
Dependencies:base64enccodetoolsdata.tabledigestfastmapfutureglobalshtmltoolslistenvparallellyR6rlangrtemis
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| 'rtemisbio': Bioinformatics ops | rtemisbio-package rtemisbio |
| Create an 'a3' object | a3 |
| Perform amino acid substitutions | aa_sub |
| Aggregate method for 'xt' object | aggregate.xt |
| as.a3 | as.a3 |
| as.a3 | as.a3.default |
| as.a3.list method | as.a3.list |
| as.xt | as.xt |
| as.xt | as.xt.default |
| as.xt.list method | as.xt.list |
| Get the sequence of a gene | gene2sequence |
| Convert integer range to character with colon separator | int2range |
| Calculate light/dark ratio for 'xt' object | light_dark_ratio |
| Plot method for 'a3' object | plot.a3 |
| Plot method for 'xt' object | plot.xt |
| Print method for 'a3' object | print.a3 |
| Print method for 'xt' object | print.xt |
| Read 'a3' object from JSON file | read.a3json |
| Read 'xt' object from JSON file | read.xtjson |
| Summary method for 'a3' object | summary.a3 |
| Create an 'xt' object | toxt |
| Get protein sequence from UniProt | uniprot_get |
| Write 'a3' object to JSON file | write.a3json |
| Write 'xt' object to JSON file | write.xtjson |
