rtemis-org. To fix this you can add URL: https://ictml-project.r-universe.dev/rtemis.bio to the package DESCRIPTION file. See also theR-universe documentation.Package: rtemis.bio 0.4.2
rtemis.bio: rtemis Bio-informatics
Bio-informatics utilities extending rtemis package.
Authors:
rtemis.bio_0.4.2.tar.gz
rtemis.bio_0.4.2.zip(r-4.7)rtemis.bio_0.4.2.zip(r-4.6)rtemis.bio_0.4.2.zip(r-4.5)
rtemis.bio_0.4.2.tgz(r-4.6-any)rtemis.bio_0.4.2.tgz(r-4.5-any)
rtemis.bio_0.4.2.tar.gz(r-4.7-any)rtemis.bio_0.4.2.tar.gz(r-4.6-any)
rtemis.bio_0.4.2.tgz(r-4.5-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
rtemis.bio/json (API)
| # Install 'rtemis.bio' in R: |
| install.packages('rtemis.bio', repos = c('https://ictml-project.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/rtemis-org/rtemis.bio/issues
Last updated from:5d26225d2a. Checks:8 OK, 1 FAIL. Indexed: no.
The latest version of this package failed to build. Look at thebuild logs for more information.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 156 | ||
| source / vignettes | OK | 219 | ||
| linux-release-x86_64 | OK | 155 | ||
| macos-release-arm64 | OK | 82 | ||
| macos-oldrel-arm64 | OK | 82 | ||
| windows-devel | OK | 110 | ||
| windows-release | OK | 85 | ||
| windows-oldrel | OK | 98 | ||
| wasm-release | FAIL | 115 |
Exports:aa_subas_A3as_Xtcreate_A3create_Xtgene2sequenceget_alphafoldlight_dark_ratioread_A3jsonread_Xtjsonuniprot_getwrite_A3jsonwrite_Xtjson
Dependencies:base64encclicodetoolsdata.tabledigestfastmapfutureglobalshtmltoolslistenvparallellyrlangrtemisrtemis.utilsS7
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| rtemis.bio: Bioinformatics ops | rtemis.bio-package rtemis.bio |
| Perform amino acid substitutions | aa_sub |
| Aggregate method for 'Xt' object | aggregate.Xt |
| as_A3 | as_A3 |
| as_Xt | as_Xt |
| Create an 'A3' object | create_A3 |
| Create an 'Xt' object | create_Xt |
| Get the sequence of a gene | gene2sequence |
| Get AlphaFold info for a given UniProt ID | get_alphafold |
| Calculate light/dark ratio for 'Xt' object | light_dark_ratio |
| Plot method for 'A3' object | plot.A3 |
| Plot method for 'Xt' object | plot.Xt |
| Read 'A3' object from JSON file | read_A3json |
| Read 'Xt' object from JSON file | read_Xtjson |
| Summary method for 'A3' object | summary.A3 |
| Get protein sequence from UniProt | uniprot_get |
| Write 'A3' object to JSON file | write_A3json |
| Write 'Xt' object to JSON file | write_Xtjson |
